Blog Post 8: Tables and Graphs

Some initial findings of my data collection in which the mosses occurring on different slope positions on several rock outcrops were identified and their percent cover classified are shown in Figure 1 (included in Assignment 5). Specifically, Figure 1 illustrates the number of plots on which each species occurs within each slope position, summarized across the 4 replicate plots.

I did not have any difficulty organizing, aggregating or summarizing my data, although I did have to manually calculate the number of plots in which each species occured based on my field data. I also had to separate out the results in order to see the results per slope position instead of just as an overall total.

I found it interesting that the three most abundant species overall (PYLSP, PLESCH, DICSCO) occurred on all slope positions and that these were the only species to occur on the west-facing slopes. I also found it interesting that of all of the other species that occurred, each of these occurred only in one slope position. These include RACCAN, which only occurs on the crest, HYPSUB and HETPRO, which only occur on the eastern slopes, and KINORE and RHYLOR, which only occur in the depressions.  This was only unexpected in that it does illustrate what I had predicted, which is a pleasant surprise. This confirms, at least initially, that I am on the right track in my investigation.

As a separate study, it could be interesting to specifically target the species of moss that were found only on one slope position elsewhere within the study area, and to collect data on the same environmental attributes (i.e. slope position, slope, aspect, substrate, overstorey and understorey cover) in these locations. Analysis of that data could reveal whether the occurrences of these species on a particular slope position are a trend or just isolated occurrences, and also to tease out which, if any, environmental attributes are correlated with the occurrences of these species.

Blog post #8: Graphs and Tables

My favourite part of the research project so far has been organizing and graphing my data. I liked being able to summarize the data in order to find the patterns.  I had no issues with organizing my data into an Excel spreadsheet, however I did have troubles choosing the best graph to represent the results.  I had counted the number of red hips and black hips present at various Nootka Rose bushes around Dallas Road and Beacon Hill Park in Victoria, along a gradient that varied in the distance to the ocean and transferred the raw data into the spreadsheet. From there, I calculated the ratio of red to black hips at each bush and took the average for each discrete zone along the gradient. I had predicted the ratio of red hips to black hips would increase linearly as the distance from the ocean increased. Although the plants growing on the cliff’s edge did have the lowest ratio (a higher number of black hips), the intermediate site actually had the highest ratio.

 

This prompted me to consider reasons why an intermediate distance may have the highest ratio of red hips to black hips. Because I am using this ratio as a proxy for survival, the rose bushes that have a higher ratio may live in a micro-environment that promotes better survival.  I thought the cliff plants would have the lowest red: black ratio because of the harsh conditions associated with living near a cliff.  However, I thought conditions would improve at greater distances because I thought the exposure to wind may also decrease and soil conditions may improve.  I will have to research reasons why the bushes on Beacon Hill would have a lower survival.

Post 8: Tables and Graphs

I found it quite simple to organize and summarize my data as the results of my field data were not so complicated. I resorted to a table to display the length and aperture measurements on both Castle beach and Jetty beach. I also made a separate column for the length to aperture ratio for both beaches. Upon calculating all the ratios, I totalled the ratios for the exposed and sheltered shores and took a mean. One of my results at Castle beach was anomalous (n=8) since it had a large variance from the mean value of 1.58. Therefore, it does not fit the remaining values and I did not use it in my calculation. The lengths of the dog whelks are generally smaller and the aperture is larger at Castle beach, giving a smaller ratio. For instance, the highest value for the length to aperture ratio at Castle beach was 1.74 while the highest value at Jetty beach was 2.04. Similarly, the lowest value for the length to aperture ratio at Castle beach was 1.37, whereas the lowest value at Jetty beach was 1.42.

An interesting investigation involving dog whelks may be comparing the genetics of dog whelks on exposed and sheltered shores and trying to explain what differences in the genetic makeup cause the variation in shell size on the shores. This study can involve more shores and replicates. However, varying abiotic and biotic factors such as weather and predators may cause discrepancies in the results.

Blog post 8 – Tables and Figures

This is one of the graphs I made with the statistics program Minitab18 after I ran an ANOVA on my data. I struggled quite a bit remembering how to run the analysis but I’m happy that I figured it out. I made another one similar to this that used aspect (NSEW) as the categorical variable, and I made a simple bar graph to visually show the differences between lichen coverage between tree type.

I predicted that the crustose lichen would be higher in abundance on coniferous trees which it was, see Figure 1 (a) below, and I was surprised that fruticose, Figure 1 (c), was also significantly different (p=0.001), favouring coniferous trees. Although moss coverage was not in my hypothesis I thought it would be higher on deciduous trees which it was (d). Aspect did not turn out to have a significant effect on lichen distribution except for the fruticose type which had a higher abundance on the eastern side of the tree (Not displayed on this graph).

I have grown quite fond of lichens and would love to explore so much more about them. I noticed that a lot more lichens were growing up higher on the trunk and in the canopy, so it would be cool to study that.

Figure 1: ANOVA results comparing the averages of the three dominant lichen growth forms (a, b, c) and moss (d) coverage between tree type, deciduous or coniferous. The means are displayed at each point on the interval plot.

Post 8: Tables and Graphs

Figure 1: Boxplot showing median (thick line), interquartile range (box), variability (whiskers), and outliers of flower per plant measurements at each site.

Due to snow, I have changed my project and traveled several hours further afield to find sites that aren’t coated in a sheet of ice. As such, I am now investigating differences in average number of flowers on Achillea millefolium (commonly known as yarrow) at two sites near Abbotsford with different elevations.

Luckily for me, I am taking this course concurrently with statistics, and so I am becoming very comfortable with using R to analyze data and produce graphs. I decided that a boxplot was the best way to compare my data, due to the ease with which one can see the differences between the two categories in median and variability. Seeing the precise numbers of every sample is simply unnecessary.

The graph does show that Site B averages a higher number of flowers than Site A. Unfortunately, the graph also exposes that the differences are fairly slight and are not likely to be statistically significance (but maybe I’ll get lucky and they will be).

I feel like I could have used further observations to reduce the variability and be more confident that the differences aren’t chance, but unfortunately the snow shows no signs of melting and another four hour trip to Abbotsford is not particularly feasible, so I will have to settle for my poorly designed little experiment and hope to gain marks for pointing out how poorly designed it is.

Dissolved Oxygen vs. CPS Capture Frequency

My project includes fish capture data (for Cultus Pygmy Sculpin; CPS) and corresponding dissolved oxygen levels.  The most challenging part of creating the graph was organizing the data into an appropriate format. I am analysing the data using Tableau Public (a free data visualization tool) which is very effective once the data is formatted.  I made a regression plot comparing CPS occurrence and dissolved oxygen concentrations. I removed the data points for minnow traps that did not yield any CPS captures, as they made the results confusing and I wanted to focus to be on where CPS are occurring as opposed to where they are not occurring.  CPS is a species at risk, so inherently it is not observed in many locations. The results were surprisingly clear.  Only 1 of the 169 captures occurred in dissolved oxygen levels of less than 7 mg/L, suggesting that CPS may have an aerobic threshold of around this level.  I find this a little surprising. I know that salmon (in general) have an aerobic threshold of around 5 mg/L. I expected CPS to be similar. Notably, this is not a huge dataset and further investigation is required before determining the aerobic threshold of CPS. This was, however, a great start.

Blog Post 8: Tables and Graphs

The results of my field data were easy to summarize and visually represent in tables and graphs. The bar graph I submitted summarizes bird abundance (number of individuals) observed at the three different sites along the urban gradient representing different levels of urbanization. I predicted that bird abundance would follow a gradient with the lowest number of individuals observed in the urbanized area (Site 3) and the highest number of individuals observed in the natural area (Site 1) . When I initially graphed this data I found that the highest abundance was in fact at the most urban site. However, further examination of the data indicated that this was due to the large portion of observations (roughly 2/3) in the urban area that consisted of seagulls and crows. As a result, the graph I created displays the overall abundance along the urbanization gradient but highlights the proportion of each bird species at each site so that the underlying trend becomes apparent, which confirms my prediction

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Blog Post 8

For one of my figures, I utilized a graph to show the average density of Northwestern Crows in each of the selected survey points. The graph highlights that as you move along the gradient from no anthropogenic disturbance to a high disturbance rate there will be more crows. The outcome was exactly as I expected with a large number of crows present in urbanized areas. The graph was consistent with lots of other research regarding the same general premise that crows are very good at exploiting urbanized areas.

Blog Post 8: Tables and Graphs

Overall, the graph results from my data collection accurately represent what I have visually noted at my sampling sites, & I am pleased with the final outcome of the visual bar graph. The data collection was the easy part, since I have had to change my final project a few times & I feel pretty well versed in collecting data samples “in the field” now.  However, it was a challenge for me to learn how to create a visual chart using Excel, as I would typically sketch my results by hand, but I managed to find helpful videos online to aid in the structure of creating a proper graph.

 

As the winter hits our little island in the Pacific & the temperature drops, taking more plants into the ground, I find that this last data collection resulted in less plants observed than my last sample session, about a month & a half ago. I half expected this to be the result as the colder temperature kills off certain plants, but I was not expecting to count as many grasses as I did. That part surprised me.

 

If I were to recreate this scenario, I would like to have taken samples at different times throughout the year, to truly observe what is happening to the plant abundance throughout the whole year. For fun, I might just take that on as a project of further exploration & interest!  I would like to see if the abundance of grasses, shrubs & forbs remains the same throughout the year, especially here in Victoria, our temperate little hub of Canada.

 

 

Blog Post 8

I found it challenging to present my data in a way that would be easy to understand without some additional text. However, it was good to get into Excel after not using it for a couple of years. As my final assignment comes together, I’m sure my visuals will change.

The outcome was not exactly what I was expecting, but with ongoing observations of the site, I have developed some additional ideas to explore. For instance, I thought there would be a steady increase in the response variable along the environmental gradient but there was some variance to it. During field observations, I noticed some microclimates in areas where stand density increased. Interesting stuff!

Here’s one of the figures I battled with Excel to make: